HL_6XYW_063

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_063 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3084

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|A|3002
6XYW|1|1|U|3003
6XYW|1|1|G|3004
6XYW|1|1|C|3005
6XYW|1|1|C|3006
6XYW|1|1|A|3007
6XYW|1|1|A|3008
6XYW|1|1|U|3009

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AM

At1g73940/F2P9_19

Chain AN

At3g51010

Chain An

At5g09770