HL_6XYW_065

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUAGAACAG

Length

9 nucleotides

Bulged bases

6XYW|1|1|U|3094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_065 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.2633

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XYW|1|1|U|3093
6XYW|1|1|U|3094
6XYW|1|1|A|3095
6XYW|1|1|G|3096
6XYW|1|1|A|3097
6XYW|1|1|A|3098
6XYW|1|1|C|3099
6XYW|1|1|A|3100
6XYW|1|1|G|3101

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain An

At5g09770

Chain Ap

At1g24240/F3I6_17