HL_6XYW_070

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUAAAAAG

Length

8 nucleotides

Bulged bases

6XYW|1|2|A|233, 6XYW|1|2|A|234

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_070 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.5826

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6XYW|1|2|C|230
6XYW|1|2|U|231
6XYW|1|2|A|232
6XYW|1|2|A|233
6XYW|1|2|A|234
6XYW|1|2|A|235
6XYW|1|2|A|236
6XYW|1|2|G|237

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bv

AT5g49210/K21P3_8

Chain By

28S ribosomal S34 protein