HL_6XYW_073

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

6XYW|1|2|C|349, 6XYW|1|2|G|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_073 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1987

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6XYW|1|2|G|339
6XYW|1|2|A|340
6XYW|1|2|C|341
6XYW|1|2|U|342
6XYW|1|2|G|343
6XYW|1|2|A|344
6XYW|1|2|G|345
6XYW|1|2|A|346
6XYW|1|2|C|347
6XYW|1|2|A|348
6XYW|1|2|C|349
6XYW|1|2|G|350
6XYW|1|2|G|351
6XYW|1|2|C|352

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial