HL_6XYW_074

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCACGG

Length

6 nucleotides

Bulged bases

6XYW|1|2|A|363

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_074 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.3659

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6XYW|1|2|C|361
6XYW|1|2|C|362
6XYW|1|2|A|363
6XYW|1|2|C|364
6XYW|1|2|G|365
6XYW|1|2|G|366

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Ak

50S ribosomal protein HLP, mitochondrial

Chain Ap

At1g24240/F3I6_17