HL_6XYW_079

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AAAAAGU

Length

7 nucleotides

Bulged bases

6XYW|1|2|A|617, 6XYW|1|2|G|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_079 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2517

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6XYW|1|2|A|613
6XYW|1|2|A|614
6XYW|1|2|A|615
6XYW|1|2|A|616
6XYW|1|2|A|617
6XYW|1|2|G|618
6XYW|1|2|U|619

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BD

Gb|AAC32909.1

Chain Bc

Ribosomal protein S4, mitochondrial

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial