HL_6XYW_081

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_081 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1615

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6XYW|1|2|C|721
6XYW|1|2|G|722
6XYW|1|2|A|723
6XYW|1|2|A|724
6XYW|1|2|G|725
6XYW|1|2|G|726

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bn

At1g15810/F7H2_23

Chain Bs

Ribosomal protein S21 family protein