HL_6XYW_087

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUUAACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_087 not in the Motif Atlas

Homologous match to HL_6CZR_093

Geometric discrepancy: 0.4652

The information below is about HL_6CZR_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|2|C|1010
6XYW|1|2|U|1011
6XYW|1|2|U|1012
6XYW|1|2|A|1013
6XYW|1|2|A|1014
6XYW|1|2|C|1015
6XYW|1|2|G|1016
6XYW|1|2|G|1017

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BF

mS31/mS46

Chain Bm

At2g34520

Chain Br

40S ribosomal protein S19, mitochondrial