HL_6XYW_088

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_088 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.2804

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6XYW|1|2|C|1068
6XYW|1|2|G|1069
6XYW|1|2|U|1070
6XYW|1|2|G|1071
6XYW|1|2|A|1072
6XYW|1|2|G|1073

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Ba

Ribosomal protein S2, mitochondrial

Chain Bd

At1g64880