HL_6XYW_094
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XYW_094 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.3713
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6XYW|1|2|C|1663
6XYW|1|2|U|1664
6XYW|1|2|G|1665
6XYW|1|2|C|1666
6XYW|1|2|A|1667
6XYW|1|2|A|1668
6XYW|1|2|C|1669
6XYW|1|2|U|1670
6XYW|1|2|C|1671
6XYW|1|2|G|1672
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Bl
- Small ribosomal subunit protein S13, mitochondrial
- Chain Bm
- At2g34520
- Chain Br
- 40S ribosomal protein S19, mitochondrial
- Chain Bx
- 37S ribosomal protein S27
Coloring options: