HL_6XYW_096

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUAACACUAGUGCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_096 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3744

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6XYW|1|2|G|1816
6XYW|1|2|U|1817
6XYW|1|2|A|1818
6XYW|1|2|A|1819
6XYW|1|2|C|1820
6XYW|1|2|A|1821
6XYW|1|2|C|1822
6XYW|1|2|U|1823
6XYW|1|2|A|1824
6XYW|1|2|G|1825
6XYW|1|2|U|1826
6XYW|1|2|G|1827
6XYW|1|2|C|1828
6XYW|1|2|C|1829

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BI

rPPR*