HL_6XYW_099
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- AGAUUGUU
- Length
- 8 nucleotides
- Bulged bases
- 6XYW|1|3|U|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XYW_099 not in the Motif Atlas
- Geometric match to HL_1WZ2_007
- Geometric discrepancy: 0.1676
- The information below is about HL_1WZ2_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6XYW|1|3|A|85
6XYW|1|3|G|86
6XYW|1|3|A|87
6XYW|1|3|U|88
6XYW|1|3|U|89
6XYW|1|3|G|90
6XYW|1|3|U|91
6XYW|1|3|U|92
Current chains
- Chain 3
- RNA (118-MER)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL
- Uncharacterized protein At1g27435/F17L21.30
- Chain Am
- 60S ribosomal protein L16, mitochondrial
- Chain Av
- Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
- Chain Az
- At5g55140
Coloring options: