3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UUUCGA
Length
6 nucleotides
Bulged bases
6XZ7|1|A|U|139
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZ7_004 not in the Motif Atlas
Geometric match to HL_4AY2_001
Geometric discrepancy: 0.2722
The information below is about HL_4AY2_001
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

6XZ7|1|A|U|137
6XZ7|1|A|U|138
6XZ7|1|A|U|139
6XZ7|1|A|C|140
6XZ7|1|A|G|141
6XZ7|1|A|A|142

Current chains

Chain A
23S rRNA

Nearby chains

Chain T
50S ribosomal protein L23

Coloring options:


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