HL_6XZ7_017

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

6XZ7|1|A|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZ7_017 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.044

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6XZ7|1|A|U|566
6XZ7|1|A|U|567
6XZ7|1|A|U|568
6XZ7|1|A|U|569
6XZ7|1|A|G|570
6XZ7|1|A|U|571
6XZ7|1|A|A|572
6XZ7|1|A|U|573
6XZ7|1|A|A|574
6XZ7|1|A|A|575

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain a

50S ribosomal protein L32