3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
6XZ7|1|A|U|958, 6XZ7|1|A|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZ7_026 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.0635
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XZ7|1|A|G|954
6XZ7|1|A|PSU|955
6XZ7|1|A|G|956
6XZ7|1|A|C|957
6XZ7|1|A|U|958
6XZ7|1|A|A|959
6XZ7|1|A|A|960
6XZ7|1|A|C|961
6XZ7|1|A|G|962
6XZ7|1|A|U|963

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16

Coloring options:


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