HL_6XZ7_028

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6XZ7|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZ7_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1046

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6XZ7|1|A|C|1064
6XZ7|1|A|U|1065
6XZ7|1|A|U|1066
6XZ7|1|A|A|1067
6XZ7|1|A|G|1068
6XZ7|1|A|A|1069
6XZ7|1|A|A|1070
6XZ7|1|A|G|1071
6XZ7|1|A|C|1072
6XZ7|1|A|A|1073
6XZ7|1|A|G|1074

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L11