HL_6XZ7_075
3D structure
- PDB id
- 6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CAG(H2U)(H2U)GGGAG
- Length
- 10 nucleotides
- Bulged bases
- 6XZ7|1|g|G|18, 6XZ7|1|g|G|19, 6XZ7|1|g|G|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XZ7_075 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1841
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6XZ7|1|g|C|13
6XZ7|1|g|A|14
6XZ7|1|g|G|15
6XZ7|1|g|H2U|16
6XZ7|1|g|H2U|17
6XZ7|1|g|G|18
6XZ7|1|g|G|19
6XZ7|1|g|G|20
6XZ7|1|g|A|21
6XZ7|1|g|G|22
Current chains
- Chain g
- fMet-Phe-tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Transfer RNA; tRNA
Coloring options: