HL_6XZB_009

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6XZB|1|A1|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1123

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6XZB|1|A1|C|342
6XZB|1|A1|U|343
6XZB|1|A1|A|344
6XZB|1|A1|C|345
6XZB|1|A1|G|346
6XZB|1|A1|G|347

Current chains

Chain A1

16S rRNA

Nearby chains

Chain K2

50S ribosomal protein L14

Chain P2

50S ribosomal protein L19