HL_6XZB_045

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6XZB|1|A2|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_045 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0501

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XZB|1|A2|G|410
6XZB|1|A2|G|411
6XZB|1|A2|A|412
6XZB|1|A2|C|413
6XZB|1|A2|C|414
6XZB|1|A2|A|415
6XZB|1|A2|U|416
6XZB|1|A2|C|417

Current chains

Chain A2

23S rRNA

Nearby chains

Chain L2

50S ribosomal protein L15