HL_6XZB_050

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

6XZB|1|A2|A|613, 6XZB|1|A2|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_050 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.1444

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6XZB|1|A2|C|611
6XZB|1|A2|G|612
6XZB|1|A2|A|613
6XZB|1|A2|A|614
6XZB|1|A2|U|615
6XZB|1|A2|A|616
6XZB|1|A2|G|617

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4