3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
6XZB|1|A2|U|958, 6XZB|1|A2|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZB_058 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.0635
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XZB|1|A2|G|954
6XZB|1|A2|PSU|955
6XZB|1|A2|G|956
6XZB|1|A2|C|957
6XZB|1|A2|U|958
6XZB|1|A2|A|959
6XZB|1|A2|A|960
6XZB|1|A2|C|961
6XZB|1|A2|G|962
6XZB|1|A2|U|963

Current chains

Chain A2
23S rRNA

Nearby chains

Chain B2
5S ribosomal RNA; 5S rRNA
Chain M2
50S ribosomal protein L16

Coloring options:


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