3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GAAACAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZB_059 not in the Motif Atlas
Homologous match to HL_5J7L_160
Geometric discrepancy: 0.0783
The information below is about HL_5J7L_160
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_42998.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6XZB|1|A2|G|978
6XZB|1|A2|A|979
6XZB|1|A2|A|980
6XZB|1|A2|A|981
6XZB|1|A2|C|982
6XZB|1|A2|A|983
6XZB|1|A2|A|984
6XZB|1|A2|C|985

Current chains

Chain A2
23S rRNA

Nearby chains

Chain Q2
50S ribosomal protein L20
Chain R2
50S ribosomal protein L21
Chain Z2
50S ribosomal protein L30

Coloring options:


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