HL_6XZB_060

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6XZB|1|A2|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_060 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1046

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6XZB|1|A2|C|1064
6XZB|1|A2|U|1065
6XZB|1|A2|U|1066
6XZB|1|A2|A|1067
6XZB|1|A2|G|1068
6XZB|1|A2|A|1069
6XZB|1|A2|A|1070
6XZB|1|A2|G|1071
6XZB|1|A2|C|1072
6XZB|1|A2|A|1073
6XZB|1|A2|G|1074

Current chains

Chain A2

23S rRNA

Nearby chains

Chain I2

50S ribosomal protein L11