3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CGACAC(6MZ)G
Length
8 nucleotides
Bulged bases
6XZB|1|A2|A|1614, 6XZB|1|A2|A|1616
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZB_072 not in the Motif Atlas
Homologous match to HL_5J7L_173
Geometric discrepancy: 0.0521
The information below is about HL_5J7L_173
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6XZB|1|A2|C|1612
6XZB|1|A2|G|1613
6XZB|1|A2|A|1614
6XZB|1|A2|C|1615
6XZB|1|A2|A|1616
6XZB|1|A2|C|1617
6XZB|1|A2|6MZ|1618
6XZB|1|A2|G|1619

Current chains

Chain A2
23S rRNA

Nearby chains

Chain S2
50S ribosomal protein L22
Chain c2
50S ribosomal protein L34

Coloring options:


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