3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
6XZB|1|A2|G|2250
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZB_085 not in the Motif Atlas
Homologous match to HL_7RQB_053
Geometric discrepancy: 0.0685
The information below is about HL_7RQB_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XZB|1|A2|C|2248
6XZB|1|A2|U|2249
6XZB|1|A2|G|2250
6XZB|1|A2|OMG|2251
6XZB|1|A2|G|2252
6XZB|1|A2|G|2253
6XZB|1|A2|C|2254
6XZB|1|A2|G|2255
6XZB|1|A2|G|2256

Current chains

Chain A2
23S rRNA

Nearby chains

Chain M2
50S ribosomal protein L16
Chain W2
50S ribosomal protein L27
Chain f2
Transfer RNA; tRNA

Coloring options:


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