HL_6XZB_085

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6XZB|1|A2|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_085 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0685

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZB|1|A2|C|2248
6XZB|1|A2|U|2249
6XZB|1|A2|G|2250
6XZB|1|A2|OMG|2251
6XZB|1|A2|G|2252
6XZB|1|A2|G|2253
6XZB|1|A2|C|2254
6XZB|1|A2|G|2255
6XZB|1|A2|G|2256

Current chains

Chain A2

23S rRNA

Nearby chains

Chain M2

50S ribosomal protein L16

Chain W2

50S ribosomal protein L27

Chain f2

Transfer RNA; tRNA