HL_6XZB_100

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6XZB|1|A2|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_100 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0446

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XZB|1|A2|G|2819
6XZB|1|A2|A|2820
6XZB|1|A2|A|2821
6XZB|1|A2|G|2822
6XZB|1|A2|A|2823
6XZB|1|A2|C|2824
6XZB|1|A2|G|2825
6XZB|1|A2|A|2826
6XZB|1|A2|C|2827

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain N2

50S ribosomal protein L17