HL_6XZB_106
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XZB_106 not in the Motif Atlas
- Homologous match to HL_5L4O_003
- Geometric discrepancy: 0.0938
- The information below is about HL_5L4O_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6XZB|1|f2|G|53
6XZB|1|f2|5MU|54
6XZB|1|f2|PSU|55
6XZB|1|f2|C|56
6XZB|1|f2|A|57
6XZB|1|f2|A|58
6XZB|1|f2|A|59
6XZB|1|f2|U|60
6XZB|1|f2|C|61
Current chains
- Chain f2
- Deacylated tRNAi(Met)
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain F2
- 50S ribosomal protein L5
- Chain M2
- 50S ribosomal protein L16
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