HL_6XZB_107

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAG(H2U)(H2U)GGGAG

Length

10 nucleotides

Bulged bases

6XZB|1|g2|G|18, 6XZB|1|g2|G|19, 6XZB|1|g2|G|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_107 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.1523

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6XZB|1|g2|C|13
6XZB|1|g2|A|14
6XZB|1|g2|G|15
6XZB|1|g2|H2U|16
6XZB|1|g2|H2U|17
6XZB|1|g2|G|18
6XZB|1|g2|G|19
6XZB|1|g2|G|20
6XZB|1|g2|A|21
6XZB|1|g2|G|22

Current chains

Chain g2

fMet-Phe-tRNA(Phe)

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain f2

Transfer RNA; tRNA