HL_6Y0G_004

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6Y0G|1|D4|C|17, 6Y0G|1|D4|G|18, 6Y0G|1|D4|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_004 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.1675

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y0G|1|D4|C|13
6Y0G|1|D4|A|14
6Y0G|1|D4|G|15
6Y0G|1|D4|U|16
6Y0G|1|D4|C|17
6Y0G|1|D4|G|18
6Y0G|1|D4|G|19
6Y0G|1|D4|U|20
6Y0G|1|D4|A|21
6Y0G|1|D4|G|22

Current chains

Chain D4

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA