HL_6Y0G_005
3D structure
- PDB id
- 6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in classical-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Y0G_005 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1402
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
6Y0G|1|D4|A|31
6Y0G|1|D4|U|32
6Y0G|1|D4|U|33
6Y0G|1|D4|G|34
6Y0G|1|D4|A|35
6Y0G|1|D4|A|36
6Y0G|1|D4|A|37
6Y0G|1|D4|A|38
6Y0G|1|D4|U|39
Current chains
- Chain D4
- tRNA
Nearby chains
- Chain A4
- mRNA
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain Se
- 40S ribosomal protein S30
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