HL_6Y0G_020

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCGGCGG

Length

9 nucleotides

Bulged bases

6Y0G|1|L5|C|995, 6Y0G|1|L5|G|996

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_020 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2616

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6Y0G|1|L5|U|989
6Y0G|1|L5|C|990
6Y0G|1|L5|C|991
6Y0G|1|L5|C|992
6Y0G|1|L5|G|993
6Y0G|1|L5|G|994
6Y0G|1|L5|C|995
6Y0G|1|L5|G|996
6Y0G|1|L5|G|1064

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6