HL_6Y0G_021

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

6Y0G|1|L5|G|1178, 6Y0G|1|L5|U|1179, 6Y0G|1|L5|C|1181, 6Y0G|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y0G|1|L5|G|1170
6Y0G|1|L5|G|1171
6Y0G|1|L5|C|1172
6Y0G|1|L5|G|1173
6Y0G|1|L5|G|1174
6Y0G|1|L5|A|1175
6Y0G|1|L5|C|1176
6Y0G|1|L5|U|1177
6Y0G|1|L5|G|1178
6Y0G|1|L5|U|1179
6Y0G|1|L5|C|1180
6Y0G|1|L5|C|1181
6Y0G|1|L5|C|1182
6Y0G|1|L5|C|1183
6Y0G|1|L5|A|1184
6Y0G|1|L5|G|1185
6Y0G|1|L5|U|1186
6Y0G|1|L5|G|1187
6Y0G|1|L5|C|1188
6Y0G|1|L5|G|1189
6Y0G|1|L5|C|1190
6Y0G|1|L5|C|1191

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like