HL_6Y0G_065

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6Y0G|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_065 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1527

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6Y0G|1|L5|C|4193
6Y0G|1|L5|U|4194
6Y0G|1|L5|G|4195
6Y0G|1|L5|G|4196
6Y0G|1|L5|G|4197
6Y0G|1|L5|G|4198
6Y0G|1|L5|C|4199
6Y0G|1|L5|G|4200
6Y0G|1|L5|G|4201

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29