HL_6Y0G_068

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_068 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1067

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6Y0G|1|L5|C|4270
6Y0G|1|L5|A|4271
6Y0G|1|L5|G|4272
6Y0G|1|L5|A|4273
6Y0G|1|L5|A|4274
6Y0G|1|L5|G|4275
6Y0G|1|L5|G|4276
6Y0G|1|L5|G|4277

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21