HL_6Y0T_002

3D structure

PDB id

6Y0T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Sarcin Ricin Loop, mutant C2666A U2653G C2667A

Experimental method

X-RAY DIFFRACTION

Resolution

1.393 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0T_002 not in the Motif Atlas

Geometric match to HL_5DDP_001

Geometric discrepancy: 0.0847

The information below is about HL_5DDP_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6Y0T|1|B|C|2658
6Y0T|1|B|G|2659
6Y0T|1|B|A|2660
6Y0T|1|B|G|2661
6Y0T|1|B|A|2662
6Y0T|1|B|G|2663

Current chains

Chain B

RNA (27-MER)

Nearby chains

Chain A

RNA (27-MER)