HL_6Y2L_059

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGACAAUCGUUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y2L_059 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.209

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6Y2L|1|L5|A|3945
6Y2L|1|L5|G|3946
6Y2L|1|L5|A|3947
6Y2L|1|L5|C|3948
6Y2L|1|L5|A|3949
6Y2L|1|L5|A|4062
6Y2L|1|L5|U|4063
6Y2L|1|L5|C|4064
6Y2L|1|L5|G|4065
6Y2L|1|L5|U|4066
6Y2L|1|L5|U|4067
6Y2L|1|L5|U|4068

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a