HL_6Y2L_096

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACUCUUUCGAGGCC

Length

16 nucleotides

Bulged bases

6Y2L|1|S2|C|539, 6Y2L|1|S2|U|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y2L_096 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1672

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Y2L|1|S2|G|534
6Y2L|1|S2|G|535
6Y2L|1|S2|A|536
6Y2L|1|S2|C|537
6Y2L|1|S2|U|538
6Y2L|1|S2|C|539
6Y2L|1|S2|U|540
6Y2L|1|S2|U|541
6Y2L|1|S2|U|542
6Y2L|1|S2|C|543
6Y2L|1|S2|G|544
6Y2L|1|S2|A|545
6Y2L|1|S2|G|546
6Y2L|1|S2|G|547
6Y2L|1|S2|C|548
6Y2L|1|S2|C|549

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Se

40S ribosomal protein S30