HL_6Y2L_112

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

6Y2L|1|S2|C|1419, 6Y2L|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y2L_112 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.2694

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6Y2L|1|S2|C|1416
6Y2L|1|S2|C|1417
6Y2L|1|S2|C|1418
6Y2L|1|S2|C|1419
6Y2L|1|S2|G|1420
6Y2L|1|S2|A|1421
6Y2L|1|S2|G|1422
6Y2L|1|S2|C|1423
6Y2L|1|S2|G|1424

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19