HL_6Y4B_001

3D structure

PDB id

6Y4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cyclodipeptide synthase from Candidatus Glomeribacter gigasporarum bound to Phe-tRNAPhe

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

6Y4B|1|F|C|17

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y4B_001 not in the Motif Atlas

Homologous match to HL_1FIR_001

Geometric discrepancy: 0.2132

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

6Y4B|1|F|C|13
6Y4B|1|F|A|14
6Y4B|1|F|G|15
6Y4B|1|F|H2U|16
6Y4B|1|F|C|17
6Y4B|1|F|G|18
6Y4B|1|F|G|19
6Y4B|1|F|H2U|20
6Y4B|1|F|A|21
6Y4B|1|F|G|22

Current chains

Chain F

RNA (77-MER)

Nearby chains