HL_6Y4B_003

3D structure

PDB id

6Y4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cyclodipeptide synthase from Candidatus Glomeribacter gigasporarum bound to Phe-tRNAPhe

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y4B_003 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.3762

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6Y4B|1|F|G|53
6Y4B|1|F|5MU|54
6Y4B|1|F|PSU|55
6Y4B|1|F|C|56
6Y4B|1|F|G|57
6Y4B|1|F|A|58
6Y4B|1|F|U|59
6Y4B|1|F|U|60
6Y4B|1|F|C|61

Current chains

Chain F

RNA (77-MER)

Nearby chains