HL_6Y57_001

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAGCGGAAGC

Length

11 nucleotides

Bulged bases

6Y57|1|B4|G|17, 6Y57|1|B4|G|18, 6Y57|1|B4|A|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_001 not in the Motif Atlas

Homologous match to HL_5E6M_001

Geometric discrepancy: 0.4149

The information below is about HL_5E6M_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76195.1

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6Y57|1|B4|G|12
6Y57|1|B4|C|13
6Y57|1|B4|A|14
6Y57|1|B4|G|15
6Y57|1|B4|C|16
6Y57|1|B4|G|17
6Y57|1|B4|G|18
6Y57|1|B4|A|19
6Y57|1|B4|A|20
6Y57|1|B4|G|21
6Y57|1|B4|C|22

Current chains

Chain B4

P/E tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA