HL_6Y57_006

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGGUUCGAUUCCGAG

Length

17 nucleotides

Bulged bases

6Y57|1|D4|U|59, 6Y57|1|D4|U|60

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_006 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3204

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6Y57|1|D4|C|49
6Y57|1|D4|U|50
6Y57|1|D4|U|51
6Y57|1|D4|G|52
6Y57|1|D4|G|53
6Y57|1|D4|U|54
6Y57|1|D4|U|55
6Y57|1|D4|C|56
6Y57|1|D4|G|57
6Y57|1|D4|A|58
6Y57|1|D4|U|59
6Y57|1|D4|U|60
6Y57|1|D4|C|61
6Y57|1|D4|C|62
6Y57|1|D4|G|63
6Y57|1|D4|A|64
6Y57|1|D4|G|65

Current chains

Chain D4

A/P tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

60S ribosomal protein L10-like

Chain LJ

60S ribosomal protein L11