HL_6Y57_042

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_042 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.195

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Y57|1|L5|C|2458
6Y57|1|L5|G|2459
6Y57|1|L5|A|2460
6Y57|1|L5|G|2461
6Y57|1|L5|C|2462
6Y57|1|L5|G|2463

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37