HL_6Y57_044

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6Y57|1|L5|U|2530, 6Y57|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_044 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1442

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Y57|1|L5|G|2523
6Y57|1|L5|U|2524
6Y57|1|L5|U|2525
6Y57|1|L5|C|2526
6Y57|1|L5|A|2527
6Y57|1|L5|G|2528
6Y57|1|L5|A|2529
6Y57|1|L5|U|2530
6Y57|1|L5|C|2531
6Y57|1|L5|C|2532

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34