HL_6Y57_047

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6Y57|1|L5|C|2627, 6Y57|1|L5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_047 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2554

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Y57|1|L5|G|2624
6Y57|1|L5|U|2625
6Y57|1|L5|U|2626
6Y57|1|L5|C|2627
6Y57|1|L5|U|2628
6Y57|1|L5|C|2629
6Y57|1|L5|U|2630
6Y57|1|L5|U|2631
6Y57|1|L5|U|2632

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Ld

60S ribosomal protein L31