HL_6Y57_049

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

6Y57|1|L5|U|2707, 6Y57|1|L5|C|2709, 6Y57|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_049 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3873

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6Y57|1|L5|C|2704
6Y57|1|L5|G|2705
6Y57|1|L5|G|2706
6Y57|1|L5|U|2707
6Y57|1|L5|U|2708
6Y57|1|L5|C|2709
6Y57|1|L5|C|2710
6Y57|1|L5|G|2711
6Y57|1|L5|G|2712

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain LX

60S ribosomal protein L23a