HL_6Y57_053

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6Y57|1|L5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_053 not in the Motif Atlas

Geometric match to HL_4WF9_040

Geometric discrepancy: 0.1161

The information below is about HL_4WF9_040

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

6Y57|1|L5|C|2872
6Y57|1|L5|U|2873
6Y57|1|L5|U|2874
6Y57|1|L5|C|2875
6Y57|1|L5|G|2876
6Y57|1|L5|G|2877

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA