HL_6Y57_054

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGGCCG

Length

7 nucleotides

Bulged bases

6Y57|1|L5|C|3584, 6Y57|1|L5|G|3585

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_054 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3773

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6Y57|1|L5|C|2905
6Y57|1|L5|C|3584
6Y57|1|L5|G|3585
6Y57|1|L5|G|3586
6Y57|1|L5|C|3587
6Y57|1|L5|C|3588
6Y57|1|L5|G|3589

Current chains

Chain L5

28S ribosomal RNA

Nearby chains