HL_6Y57_080

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6Y57|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_080 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1317

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6Y57|1|L5|G|4975
6Y57|1|L5|U|4976
6Y57|1|L5|A|4977
6Y57|1|L5|G|4978
6Y57|1|L5|A|4979
6Y57|1|L5|C|4980
6Y57|1|L5|G|4981
6Y57|1|L5|A|4982
6Y57|1|L5|C|4983

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31