HL_6Y69_006

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6Y69|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_006 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.062

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Y69|1|A|G|194
6Y69|1|A|A|195
6Y69|1|A|A|196
6Y69|1|A|A|197
6Y69|1|A|C|198
6Y69|1|A|A|199
6Y69|1|A|U|200
6Y69|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28

Chain w

Transfer RNA; tRNA